HsaINT0188823 @ hg38
Intron Retention
Gene
ENSG00000182318 | ZSCAN22
Description
zinc finger and SCAN domain containing 22 [Source:HGNC Symbol;Acc:HGNC:4929]
Coordinates
chr19:58327019-58335205:+
Coord C1 exon
chr19:58327019-58327114
Coord A exon
chr19:58327115-58334751
Coord C2 exon
chr19:58334752-58335205
Length
7637 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AAGCTCTGACATTCCTGCAGGCC
3' ss Score
6.11
Exon sequences
Seq C1 exon
GAGGTGTGCTGGGAGCTGTGGTCCGGGTCGGCGGGCGCGCAAGTTGGCTAGTCTCTGCGGCCACCTCCGGAAGGGTCCGCCGGCTGTGCTGGTGAG
Seq A exon
GTGGGTTTCGGGGGTGTTCTCCGTCCTGATCCAGGCTGGAGAGGGGCACAGCAGGTCCAGAAGCCGCGAACCTCTGGGGCGGCCAGAGCGAGATGCGGGGTACCGCCCAGCGGGTAGAGAGTGAGAGGCTGACTAGGGGACGTGAGTAGACGGACTGCGAGTGCCGGACACACGCGCAGAGGATGTGACGGACTGACGGACCAGGCGTGGACGGACCGTGTGTGCACGGACTGACGGACCCGGTGTGGACAGACTCACGGACCGAATGTGGTGCGGAATGACACACTGAGTGCCGGACGGACCGACGGAGAATGTGTCGGACTGACGGAGTGTGTGTCGGATGGACTGATTGACCGGGTGTGGGGCGGACGAAGTGTGGAGCGGGCGGACAGATAACAGATAAAATGTAGGACCAGTGGCCTGGGAGGGTGTGGGGCGGACCCGTTTATGTGTCTGATAGGCGGTTCTGTGTCTGACACCTCTTGGGTGTGTGTATCTGACGGGTTGGAGTGTGTGATTCTGATAGGTTGAGTGTAACACTAACCATGGAGTGTGTGACTGACAGAGATGGTTGCCGTTTGAGACTTCCTACGTGGGTTGTGAGATACTGTGAGAGGGTGAGCGTGTGACGGTGGGATTTCAAGTGTGACTGATTTTCTTTGTGTGTCCTTGAGATGGTGACTAAGATTATGAATGACTGTGATCAGAATAATACTGTGTGATGGAAATGCTGCGAGGGCCTGTGTTTATTTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCCATCTCCCGGGTTCAAGCGATTATCCTGCGTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCGGCCACCACACTTGGCTAATTTTTGTATTTTTGGTAGAGACGGGCTTTCACCATGTTGGTTAGGCTGGCCCGGAACTCCTGACCTCAGGTGATCCACCTGCCTAGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCATGCCTGGCCAGGCCTGTGTTTATTTGACTGATTATAGGTGACATTGAGATATTTCCTGTGTCTGGGTATTTTGAAGGCTGTGGCTGACAGACTGTACCTGAGATAATATGTGTTAATATCTGATTGACTGAGATTTTTATCAGGGAGACTAAAACTTGGGTGATCCACAAACAGTTTACCAAGCATATGAGAGAGGATTTGTGCTTTGCCATGTCTGCAGCTGAAACTGAGTGACTAGTGGTCATTCAGCTGGGCTTATGGATATGTCCCCCAGTGTTTGCTTACGTGTAGCAGGGGGCTATGGTATCCATACATCTACTGCATGTTTACTGTGCACCAGGCCTGTGCTGGACACTTATAATAAATCACCTCACATAATCTCATAGCAACCCTCTGAGGTAGGTACCATTATCAGGCTTGGTATAATCCATGTGTGAGAAATGAAAAGAACCACCCTCCTTGGTTGGTAAAGCAGCTGTGGATGGGGAACCTCAACCTGATAGGAGTTGAGGTTGGCTGAGGAGGCTGAGGAAGTTTCACATACATGTATTTCAGAGACCGTCATGAGGGATTTCTCCAGAACAGGTGTTCCAGGGGTGCAAAAGAGAACTTGGAAGCTGTTGCAGCATCTATTGTCATCCCTGCCACCCTTGCTCCTCCTTCCCCTCATGATTCCCTACATTCTTGGGTAACCATGCTCAGCCTTTACTGGTCATTCCATTTGCTTAATGCCTGCTTATTGTGAACCTGCTATAGGGCAAGTCCTGTGTGCTGTGGCTCCAGGACAGCCCAGCCTCTCTGAGGAAACAGTACAGAACTAGCAAAGAGTTACCCAGGGCACTCTGGGAAGAGGACTTAGACTAGTACCAGGTATCTGGGATGACACCTGAGGAAAGTGGCAGCTAAGATGAGGCCTAGAGAGCCCAGAGGAATCCGTCAGAGACGGATTTCAGAACTCGAGAGCAGCAGGGGCGACAAGGGGCTTAGAAAGGCCACAAGAGACCCAGGAGAACTTTACAGTGCGGCGAAGGGGCTTAAACGCAGCTTGGCCAGAGGCCACCAGAGGTCACCAGCGGTCACCAAAAGGTTTCAGGATTGGGGTCTTGTTTTAGAGTAACGTTCTCTTCTTCCTGTGCCCAAGGCCATTGCTCTTTCTCAGGCCTCCTGCATCTCTGTCCAGGGTGACTTCCTTGAGCAGAGACTCCAGGCACACTGAGCGTCCTGGCTGACATTGAAGGAAAGGAAAAAGAACTCCAAATACTTAAAACTGTGGGAGTCGTGGATGGGAGAGGGAGAGGCTAAGTCTTTGAGTAAGGAGTAGTATGTGGCCAAAGCAAAGTGTCGAGGTCTCCTAGGAGAGGTTACACTTAATTTAGGGTATTCTTCCTGACTATAAGAGAAAACAAATTCACTGTGGGAAGTAGAGAATGTCAAGAAAAGTAATACAGTAGTCACCCCTCATCTTCAGTTTTGGTGAATATAGTACAATAAAATATTTTGAGAGAGAGAGAAAGACCACATTAATATAGCTTTTATTACAGTGTATTGTTATAATTGTTCTATTTTATTAGTCATTGTTGTTAATTTCTTACTATGCCTAACTTATGAACTTTATCAAGGGTATATAATAAGAAAAAAATATAGAATATATAAGGTTCAGTAATATCCATGGTTTCAGGCATCCACTGGAGGGTCTTGGAACACATCCCCTGCAGATAAGGGGGAACTACCATAGTATAAAATACCTTGGTAAGGATGTAGAGAAATTGGAACCCTCATCCACAACTGGTGGGAATGCAAAATGGTATAGCCAATTTGCAAAACAGCCTGGCAGTTTCTTAAAAAGTTAAGCATTGCCTACATGCGGCCAGGCGCAGTGGCTCATGCCTGTAATCCCAGCAATTTGGGAGGCTGAGGTGGGCGGAACATGAGGTCAGGAGATCGAGACCATCGTGGCTAATACGGTGAAACCCCGTCTCTACTAAAAGTACAAAAAAAAATAGCTGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAAAGCAAGACTCCGTCTGGAGAAAAAAAGAATTTTTTCAAAAAGAAAGTATTATCTCCCTCTGAATGTCGGTAGCACCCCCATCTAGAAATGGGGCTAGATTCTGAGAAGTAGAATTAATATTGAGGCAGAGAGCACAGTCATTTTAAAGCTCTTACAACATACTGCCAAATTGTTTGCCAAAGATATTCTAATTGATTGCCCTCACCAATAGTACATGAAAGTAGTTTTTTGCTGTCCCTGACCAGCATTCAGTGCTCACAGTTCTAGAATTTGGAAAGGCTTTGAGTGTGGAGGAAAGATCGCAGATAGCCTGAGCTCAAACACTAGCTTTGTTCCTACTGACCAGATGACTCTAGCAGCTGACTTTCCCCAACTTGGAAAATGGGAGTGGTAATACTGACTCACAGGGTGGAGCTAAGGCTTGAATGGGATAACAGATGCCAAAGGCTAGTGTGGCCTGGTAGCCGGTAGGTTCCCACTGACTGTCTGTTCCCATTTTCTTTTATTCCTGTTGCACACTATACCCATATCCATCATCATAATTATCTTATCATGTGTTGGTCGCTGTCCTTCCGTTGAGGCCATTGAGCCCAGCACCCATGCCTTCCCCGTATTTGCATTCCTAGTACAGTGCTGGGCACAGAGTAGGCACCTAATGGGGCTGTGCTGAACAAAAGTATTATTATTGATGTATGTGCCCAGCAATGCTGTAGACACTGGGGATAAAGCAAAGACCTAAACAAAAACCCCTGCCCTTAATGTGCTGATACTCCAACAGGGACAAGTAAATAATAAACAAGTAACCACATACGTGTATCACACATCAGGTGGTAAAGAGCAAATAAAGCAGTGTAGAAGCACAGAGACTTACTGATAAGGCGTCTTTTGTGTAGAGGCCTGACTTAAATAAGGGAGAGAACACCCAACAATTATCAAATGCACTTTTTTTTTTTTTTTTTTTGAGACAGAATCTCACTCTGTCGGCCAGGCTGGAGTGCAGTGGCACAATCTCTGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGGATTACAGGCCCCCGCTGCCACGCCTGTCTAGTTTTCATATTTTTAGTAGAGATGGGGTTTCGCCATGCTGGCCAGGCTGGTCTTGAATTCCTGACCTTGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGTCCAGCTGACGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGAGATGGAGTCTCTGTTGCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAATCTCCACCTCCCGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTACAGGCACACGCCACCACGCCCAGCTAATTTTTTTGTATTTTTAATAGAGACGGGGTTTAATCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTTGTGATCGGCCCAGCTTGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACCGTGCCTGGCCAACATTATTTTTTTAAAAGCTGTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCAGAATCTCGGCTTACTGCAGCCTCCACCTTCCAGGTTAAAGGGTTTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGCTGATTTTGTATTTTTAGTATAGATGGGGTTTCTCCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTACTCGCCTCGGTCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCTCCAGAACATTTTTATCATCCCCAAAAGAAATTCCCAAACCTATTAGCAACCACTCTCATTTTTGTCTCTCTTCAGCCTCTGACAAACACTAATATGCTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTACCTCTGTCGCCAAGGCTGTAGTGCAGTGGTGTACTCTCGGCTCACTGCAACCTCTGCCTCCCAAGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGTAGTTGGGATTACAGGTGCCTGCCACCACACCCAGCTAATTTTTGTATTTTTTAGTAGAGACGGGGTTTCACTGTGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGGATCACAGGTGTGAGCCACCGTGCCCTGCCGTGTCTTTCTTCTTTTACTTAGCATCATGTTTTCAAGGTTCATCCATGTTGTAGCATTAATCAGTACTTCATTTCTGTTTATGGTGAATAGTGTTCCATTATAGGTATATACAGCATTTTATCCATTCATCAGGTGGACATTTGGATTGTTTCTCCTTTTTTGCTGTTATGAGTAATGCTGTTATGCACATTTATGTATAAAGTTTTGTGAGGACATATACTCATTTCTCTTGGGTCTATACGTAGGAGTAGAATTGCTAGGTCATGGGGTAACTCTGTTTAAGCTTTTGAGGAACTCCCAGACTGTACTTCCCACAGTGGCTATCCCATCTTACATTCCCAGCAGCAGCATATGAGGATTACAGTTTCTCCATATCCTTGCCTACACATGTTATCTGATTATAGGCATCCCAGCAGGTGTGAAGTGCTATCTCATTGTGGTTTTCATTTGCAGTTCCCTGGTAGCTAGTGATGTTAAGCATCTTTTCATGTATTTATTGCCCATTTGTGTATCTTCCTTGGAGAAATGTCTAGTCACATTCTTTGCTCATTTTAAAATTGTATTATTCATCTTTTTACTATGGAGTTGTTCTAGATACAGGTCCCTTATCAAATATATGATTTGCAAATATTTTCTCCCACTCTGTGGGCTGCTTTTTTACTTTCTTGATGTGGTCCTTCAAATCACAAAAGCTTTTAATTTTGATAAAGTCCAGTTTATTTATTTTTTCTTTTGTTACTTATGCTTTTGGTGTCATAGCTAAGACAGCTTTGCATTATTTTCAAGTATTCATGGAACATTAACCAAAATTAACCATACACTGGGTCACAAACCAAGTTTCAGCAAATTTTAAATGATCGAAATCCATTGTAGCATGTTTTCTGACCACAACAGACTTAATCTAGACATCAGTAATAAAAAGACAACTAGAAAACCCCCAGTTGTTTGGCAATGAAGCAGGAGAGTTTTAAATAAATAACCAATGGGACTGGGCATGGTGACTCATGCTTGTAATCCCAGCACTCTGTGGGGCCGAGGCAGGCAGATCGCTTGAGGTCAGGAGTTCGAGACCAGCCCCGCCAACATGGCAAAACCCCGTCTCCACTAAAAATACAAAAATTAGCCTCACATGGTGGTGCACACCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAACCCGGGAGGCGGAGTTGCAGTGAGCCGAGATAGCGTCACTGCCCTCCAGCCTGGGCGACAGAGGGAGACTCCGTCTCAAAAAAATAAAATAAATTTTAAAAAATAATTAATGAGTAAGGTAGAAATTGTAACAGAAATTAGAAAATATTTTTAACTAAATGATAATGAAGATACAACATATCAAACTTGTGATGTATAGCTAAAGCTGTGTTTAGAGAGAAATTTATAGCCTTAAATATGTGCATTAGAAAAGAGGAAAGGCGAAAGTCAATTATGTATCAATCTCAAACACTACAAAATAATTAGCAAGTAAAGTGAGAGAATGACCATGTGGCTACCTGGGGAACAGAGGGAGAAAGACTTGGCTCTGTTGGGGAGGAGCACGCCTTAAACAGGCTGGCTGTAGGTTTGCGTGGGTTTGTAGCTTAGCTCTCTGTTAACCCTTCACTAGCTGAGGGACTTTGGGCAAATATTTTCCTCCTGAGTGTCTGTTTTTCCATCCATAAAATAGGTAGAAAGTCCCACCTCCTGAGTTTGTTGTAAGTTTTTTGTTTGTTTGTTTTTGTTTTGAGACAGAGTCTTGTTCTGTTGCGCAGGCTGGAGTGCAGTGGCGTAGTCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACCACAGGTGCCCGCCACCACGTCTGGCTAATTTGTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTGTTTGTTGTAAGTTTTAAATGAGTCTACATGCAAGCAGTAGTAGCTTAGAACAGTGCTCAGCACCAAGTGGGTGCTGTCCTAATTATGAGGATTGTCTATGTCTTTGTGAGAGTCTTTCACATCTCACGGGCCACAAGCCTGTGTTTTCCCTGCTCTGTAGGCATGAGGCAGGGCCCAGGTTCCATGTGATGCTGAAGCTCTGACATTCCTGCAG
Seq C2 exon
GCCCAGTTCCAAGGCTCCGGCATCCTGTGTCTCACTGAGCACTGCTGCCCGATGGCCATCCCCAAGCACTCCCTGAGCCCAGTGCCGTGGGAAGAGGACAGCTTCCTTCAAGTGAAGGTGGAGGAGGAAGAGGAAGCCAGCCTCTCCCAGGGCGGAGAATCCAGCCATGACCACATTGCTCACTCTGAGGCTGCACGCCTGCGCTTCCGGCACTTCCGCTATGAGGAGGCATCTGGTCCACACGAGGCCCTGGCCCACCTCCGAGCGCTGTGCTGTCAGTGGCTGCAGCCCGAGGCGCACTCCAAGGAGCAGATACTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGGTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAGAGTCCCAAGAGCGGAGAGGAAGCCGCTGTGCTGGTGGAGGATCTGACTCAGGTGCTGGACAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182318:ENST00000329665:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.267
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.8=68.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains