MmuEX0054059 @ mm9
Exon Skipping
Gene
ENSMUSG00000054715 | Zscan22
Description
zinc finger and SCAN domain containing 22 [Source:MGI Symbol;Acc:MGI:2443312]
Coordinates
chr7:13483164-13493588:+
Coord C1 exon
chr7:13483164-13483329
Coord A exon
chr7:13488950-13489434
Coord C2 exon
chr7:13491583-13493588
Length
485 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCTCCCTTCTTTCAGATG
3' ss Score
13.46
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGCGCATGTGTGTGCGTCACCAGGACGCCTTTGGAAGTGTCCGCTGGGAGTTCTGGAGACCCGGTGAGCGCGGGAACCCTGGCATGGAGGGGTGAGGGCTGCGAACGCCCACGGCAAACCTAACGGCCTGTGAGTACAGGACAGAGTGTGTCACGGCTGATGGAGT
Seq A exon
ATGGTGATGAAGCTCTAACGTTTCTTCAGCCCCAATTCTGAGGCTTGAGTCGTCCCTGTGACTCACTGAATTCTTCTGCCCAATGGCCATCCCCAAGAGCCCTCTGAGCCCAGTACTCTGGGAACAGGATAGCTTCCTTCAGGTGAAGGTGAAAGAGGAGGAAGAAGCTAGCGACTCCCCGAGCCAGGAATCCAGCCCTAGCTTTACTGCCCACCCTGAGGCTGCACGATTGCGCTTCAGGCACTTCCGCTATGAGGAGGCATCCAGCCCTCATCAGGCGCTAGCCCAACTGCGAGAGCTATGTTGCCAGTGGCTGAGGCCAGAGTCGTCCTCCAAAGAACAGATGCTGGAGTTGCTGGTGCTGGAGCAGTTCCTGGGTGCGCTGCCCCCTGAGATCCAGGCCTGGGTGGGTGCTCAGTGCCCAAAGAGTGGAAAGGAGGCTGCCGTTCTGGTGGAGGATATGACTCAACTGCTGGACAGGAGAG
Seq C2 exon
GATGGGAGCCAGGAGTGGAACGTGAAGAGGCAAGTTGCAAACAGAGCAATACAGATGAATTGGAGCCACCAAAAATGGCGACTGAAACTGTCATGGGAAGCGTTTTGCCAAAATCTACCCTTGCCCACACTTGTAAACCTGAGAGCCACTCAGAGAGCCAGCCAGAATTCCTAGGAGCACTCTGGATGAAGTCTACTGCCCAAGAGATGGATTTCAGAAAAGCTCTGGGGCCTCACATGGATGCCCCCAAAGACCAGCCTGGCCATGAGTCTAACACCTCAGGAAACGGTTCCAACATGTGGCCCAACTTCCCTTCCCAAGACAAGGCTTCTTCAGAGGAGAAATTTGGCCCATTACTTGATAATGAGACAGTGCCTCCAGATACTTGCTCAGAGAAGAAATCCTCCAAGGATAGTGAATGTTTGAAAACATTCCAGAACACTTCAGCTCTGGAGGCCCACCAGAAGAGCCACTCTCAGAAGACGCCCTATGCCTGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054715_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.252 C2=0.436
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(96.8=68.1)
C2:
PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF0013017=C1_1=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=7.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGTGTCACGGCTGATG
R:
GCCTTGTCTTGGGAAGGGAAG
Band lengths:
353-838
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types