HsaALTD1000527-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2818927-2821067:+
Coord C1 exon
chr16:2818927-2818949
Coord A exon
chr16:2818950-2818969
Coord C2 exon
chr16:2820955-2821067
Length
20 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TCCCACTATCGTCCGCACAGCAC
3' ss Score
6.19
Exon sequences
Seq C1 exon
GACTGCTGGGTGACTGGCTGGGG
Seq A exon
GTACATCAAAGAGGATGAGG
Seq C2 exon
CACTGCCATCTCCCCACACCCTCCAGGAAGTTCAGGTCGCCATCATAAACAACTCTATGTGCAACCACCTCTTCCTCAAGTACAGTTTCCGCAAGGACATCTTTGGAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038-5-15,6-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCTGGGTGACTGGCT
R:
TTGAGGAAGAGGTGGTTGCAC
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains