MmuALTD0011134-3/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23837491-23842525:-
Coord C1 exon
chr17:23842432-23842525
Coord A exon
chr17:23842245-23842431
Coord C2 exon
chr17:23837491-23837648
Length
187 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGA
5' ss Score
1.44
3' ss Seq
CTGTATCTTCCTACCCCCAGAGC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTACCTTGATCCAGAAAAGTGGACCGTCCAGCTTGGGCAGCTTACATCCAAGCCGTCTTACTGGAACAGGAAGGCCTATTCTGGACGGTACAGG
Seq A exon
GTAAAGGACATCATCGTAAACTCCGAAGACAAGCTGAAGTCCCATGACCTGGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGGACATCCAGCCTGTCTGTGTGCAGCCTTCCACCTTTACGTCCCAGCACCAGCCCAGGTGCTGGGTGACCGGCTGGGGAGTCCTTCAGGAGGATTTGA
Seq C2 exon
AGCCTCTGCCACCGCCCTATCACCTTCGAGAAGTACAGGTCAGCATCCTAAACAACAGCAGGTGCCAGGAGCTGTTCGAGATTTTCTCCCTACACCACTTGATCACCAAGGATGTGTTCTGTGCTGGCGCTGAGGATGGGAGCGCAGACACCTGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-6-6,7-6,9-6,10-6,11-6-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(47.9=95.8)
A:
NA
C2:
PF0008921=Trypsin=FE(21.9=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAAAGTGGACCGTCC
R:
GTCTGCGCTCCCATCCTCAG
Band lengths:
234-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types