HsaALTD1000594-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000007372 | PAX6
Description
paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
Coordinates
chr11:31800691-31801776:-
Coord C1 exon
chr11:31801762-31801776
Coord A exon
chr11:31801561-31801761
Coord C2 exon
chr11:31800691-31800856
Length
201 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
GATTTTGGTTTGATTTGCAGGTG
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTGTCCAACGGATGT
Seq A exon
GTGAGTAAAATTCTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCAATCGGTGGTAGTAAACCGAGAGTAGCGACTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAGCGGGAGTGCCCGTCCATCTTTGCTTGGGAAATCCGAGACAGATTACTGTCCGAGGGGGTCTGTACCAACGATAACATACCAAGC
Seq C2 exon
GTGTCATCAATAAACAGAGTTCTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGAACGGGCAGACCGGAAGCTGGGGCACCCGCCCTGGTTGGTATCCGGGGACTTCGGTGCCAGGGCAACCTACGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007372-36-80,39-80,41-80-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.017 A=NA C2=0.637
Domain overlap (PFAM):
C1:
PF0029213=PAX=FE(4.9=100)
A:
NA
C2:
PF0029213=PAX=PD(22.0=32.1)
Other Inclusion Isoforms:
ENSP00000241001, ENSP00000368401, ENSP00000368403, ENSP00000368406, ENSP00000368424, ENSP00000368427, ENSP00000397384, ENSP00000404100, ENSP00000431585, ENSP00000480026, ENSP00000490963, ENSP00000491295, ENSP00000491492, ENSP00000491679, ENSP00000491779, ENSP00000491862, ENSP00000491872, ENSP00000492024, ENSP00000492296, ENSP00000492315, ENSP00000492397, ENSP00000492409, ENSP00000492476, ENSP00000492802, ENSP00000492822
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains