HsaALTD1003249-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50675329-50680282:+
Coord C1 exon
chr12:50675329-50675448
Coord A exon
chr12:50675449-50675451
Coord C2 exon
chr12:50678679-50680282
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTAGTAGTA
5' ss Score
-12.24
3' ss Seq
TTGGGATTTTCCTGGTACAGTAC
3' ss Score
3.09
Exon sequences
Seq C1 exon
GTGTTCCTGTCAGTAGCAGAGTATCTACAAAAATCCAGCAGCTTCTGAACACTCTGAAACGACCCAAAAGGCCTCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAG
Seq A exon
GTA
Seq C2 exon
TACCTCAGCCAGACCCCAACCAGCCCAAGCCGGAGGGACGGCAGATGACCCCTGTGAAAGGAGAGCCTTTAGGAGTCATCTGTAACTGGCCTCCTGCTCTTGAATCTGCCCTGCAGCGCTGGGGTACCACTCAAGCAAAATGCTCCTGTCTGACTGCACTGGACATGACAGGGAAACCAGTTTACACTCTTACATATGGTGAGTCTGCAAGATTCCAGATCCTTCTCTCCTGAGAGTTCTTCAGAATATCATGGGTAGTGTTTTTATCTAGATACTTAGCAGTTGCTGGCCATTATGTTTCAGTAGATTTTTTCAATAATTTAAAAGGATCCTAAGCTCTAAGTAAAGCTATTGCCAAATATTTTCATTTGCTAAAGCAACATTTGCAAGCCAGCTAATATTTAAAAGACAGCAAAAAGAAGAGAGACTTTGTACATCCATAGATGTTTTAACATTACAAGAGGATTTTAGAAAAACATTTGGTATTGATGTATGGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-20-24,21-24-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=NA C2=0.284
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(26.8=38.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGCTTCTGAACACTCT
R:
GTTGGGGTCTGGCTGAGGTA
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains