HsaALTD1003412-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92703395-92703921:-
Coord C1 exon
chr1:92703841-92703921
Coord A exon
chr1:92703737-92703840
Coord C2 exon
chr1:92703395-92703619
Length
104 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TAATTTTATTTTATTTTTAGGAA
3' ss Score
8.88
Exon sequences
Seq C1 exon
CCCTTTGAATGTTGGGTACTGTACCATCATTCACAGCTCTGCAGGTTTCAAGTCCATTACCTTAAGAGGTCACACACTGAG
Seq A exon
GTGAAATGATCATTATTAATCCCCTGACCAGAAGAGGATACACCCAGGGCCCAATCTTACCCTTGACTTACAGGGTTCCCTAGTCTTATTATAAAGCTAGCTTT
Seq C2 exon
GAACTTGTTCATAAAGGGATACCCCATCACTTTAGAGCAATAGTTTGGCAACTTTTATGCAGTGCACAAAGTATGCCAATTAAGGATCAGTATTCAGAACTCCTGAAAATGACCTCGCCTTGTGAAAAATTGATCCGAAGGGACATTGCTAGAACTTACCCTGAACACAACTTTTTTAAGGAAAAAGATAGCCTTGGACAGGAGGTTTTATTTAATGTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-29-76,30-76-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCAGGTTTCAAGTCCA
R:
ACCTCCTGTCCAAGGCTATCT
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains