HsaEX0023375 @ hg38
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92677158-92736627:-
Coord C1 exon
chr1:92736398-92736627
Coord A exon
chr1:92695310-92695453
Coord C2 exon
chr1:92677158-92677218
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATTATTTTCTTCTCTTTAGGAG
3' ss Score
9.8
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTGGCGACAGACAAAGTTGCAGAAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTACTTCATTACATACCACATCCTCATCTACCACACTATCAACACCAGCCCTTTCACCATCTTCCCCATCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAAGAACAGAATAG
Seq A exon
GAGCATCTTCCAGAGCTCTTTGTACATTTTCAATCTCAGAGTTTTCATACCTCAATGTATGCATCATCCTGGTTTCTGACTATCTTTCTTACAACTTTTCCACTACCAATTGCAACAAGGATATTTGATATCTTTATGTCTGAG
Seq C2 exon
GCTTGAAAAGGAATACACTACAATAAAAACGAAAGAAATGGAAGAGCAAGTTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208_MULTIEX1-7/20=C1-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.625 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=FE(23.2=100)
C2:
NO
Main Skipping Isoform:
ENST00000540033fB15072
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGCTCTACTCTCTCATGG
R:
ACTTGCTCTTCCATTTCTTTCGT
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development