DreEX6022143 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29052758-29053659:-
Coord C1 exon
chr6:29053534-29053659
Coord A exon
chr6:29053046-29053189
Coord C2 exon
chr6:29052758-29052847
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTCTCCCTGCAGGAG
3' ss Score
12.56
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGCCAGAGGAAGAAGCATTCTGTGTGTTTGTGAAACTGATGCAGGAGTACAGGCTGAGAGAGCTTTTCAAACCCAGTATGGCTGAATTGGGCCTCTGCATGTATCAGTTTGAATGTATGATTCAG
Seq A exon
GAGCAGCTACCAGAGCTCCATGTGCACTTCCAGGCCCAGAGTTTCCACACCTCCATGTATGCTTCATCCTGGTTCCTCACCATCTTCCTAACCTCTTTTCCTCTTCCTGTTGCCACCAGGATCTTTGATATATTCATGTGTGAG
Seq C2 exon
GGTTTAGAGATAGTGTTTCGTGTGGGGATGGCCATCCTGCAGATGAATCAGGCTGAGCTCATGCAGTTGGACATGGAGGGAATGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'20-15,'20-14,21-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(20.2=100)
A:
PF0056613=RabGAP-TBC=FE(23.2=100)
C2:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGGAAGAAGCATTCTGT
R:
GCAACATTCCCTCCATGTCCA
Band lengths:
212-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]