RnoEX6041416 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2950533-2953617:+
Coord C1 exon
chr14:2950533-2950658
Coord A exon
chr14:2952556-2952699
Coord C2 exon
chr14:2953528-2953617
Length
144 bp
Sequences
Splice sites
3' ss Seq
TATTCTTTTCTCTTCTCTAGGAG
3' ss Score
12.11
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ATGCCAGAAGAAGAAGCTTTTTGCGTATTTTTTAAATTAATGCAAGACTACCGACTTCGTGAACTGTTTAAGCCAAGTATGGCAGAGTTGGGCCTGTGCATGTACCAGTTTGAATGCATGATACAG
Seq A exon
GAGTATCTTCCAGAGCTCTTTGTACATTTTCAGTCTCAGAGTTTCCATACATCAATGTATGCATCATCCTGGTTCCTGACTATCTTTCTTACAACTTTCCCACTACCAATTGCAACAAGGATATTTGACATCTTTATGTCTGAG
Seq C2 exon
GGTTTAGAAATAGTGTTTCGAGTAGGATTAGCACTTCTTCAGATGAATCAGGCAGAATTAATGCAACTTGACATGGAAGGGATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'30-25,'30-24,32-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(20.2=100)
A:
PF0056613=RabGAP-TBC=FE(23.2=100)
C2:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAAGAAGAAGCTTTTTGC
R:
ACATCCCTTCCATGTCAAGTTGC
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]