GgaEX1023239 @ galGal3
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14770173-14772146:+
Coord C1 exon
chr8:14770173-14770298
Coord A exon
chr8:14770895-14771038
Coord C2 exon
chr8:14772057-14772146
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCATCTTTCTCCAGGAG
3' ss Score
11.76
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
ATGCCGGAAGAAGAAGCATTCTGTGTGTTTGTTAAATTAATGCAGGATTACAGACTACGAGAACTCTTTAAACCAAGCATGGCTGAGCTGGGCCTTTGTATGTACCAGTTTGAGTGCATGATACAG
Seq A exon
GAGCATCTTCCAGAACTTTATGTGCACTTTCAGTCTCAGAGTTTCCACACTTCTATGTATGCATCATCATGGTTTTTAACTATATTTCTTACAACTTTTCCACTACCAATTGCAACAAGAATATTTGATATCTTTATGTCTGAG
Seq C2 exon
GGTTTAGAGATAGTATTTCGAGTAGGTTTAGCACTACTTCAGACAAACCAAGCAGAATTGCTGCAACTTGACATGGAAGGGATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935-'10-8,'10-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(20.2=100)
A:
PF0056613=RabGAP-TBC=FE(23.2=100)
C2:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGGAAGAAGAAGCATTCT
R:
ACATCCCTTCCATGTCAAGTTGC
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]