BtaEX6016590 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50937310-50940030:+
Coord C1 exon
chr3:50937310-50937435
Coord A exon
chr3:50938849-50938992
Coord C2 exon
chr3:50939941-50940030
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATTCCTTTCTTCTATTTAGGAG
3' ss Score
8.78
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGCCAGAAGAAGAAGCTTTCTGTGTATTTGTTAAATTAATGCAAGATTATAGACTTCGTGAACTTTTTAAACCAAGTATGGCAGAATTAGGCCTTTGTATGTACCAGTTTGAATGCATGATACAG
Seq A exon
GAGCACCTTCCAGAGCTCTTTGTGCATTTTCAGTCTCAGAGTTTTCATACCTCAATGTATGCATCATCATGGTTTCTGACAATCTTCCTTACAACTTTTCCACTACCAATTGCAACAAGGATATTTGATATCTTTATGTCTGAG
Seq C2 exon
GGTTTAGAAATAGTGTTTCGGGTAGGATTAGCGCTTCTTCAGATGAATCAGGCAGAACTGATGCAACTCGACATGGAAGGGATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'13-11,'13-9,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(20.2=100)
A:
PF0056613=RabGAP-TBC=FE(23.2=100)
C2:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAAGAAGAAGCTTTCTGT
R:
ACATCCCTTCCATGTCGAGTTG
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]