GgaEX1023239 @ galGal4
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13010148-13042749:+
Coord C1 exon
chr8:13010148-13010386
Coord A exon
chr8:13019114-13019257
Coord C2 exon
chr8:13042654-13042749
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCATCTTTCTCCAGGAG
3' ss Score
11.76
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
TCATCACAGGTGGCGACAGACAAGGTTGCAGGAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACTGTATCGCACACCGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCCTTACACACTACATCCTCCTCTACCACTCTGTCTACACCTGCGTTATCACCATCCTCACCAGCGCAGCTGAGTCCAGACGACCTAGAATTACTGGCTAAACTTGAGGAGCAGAACAG
Seq A exon
GAGCATCTTCCAGAACTTTATGTGCACTTTCAGTCTCAGAGTTTCCACACTTCTATGTATGCATCATCATGGTTTTTAACTATATTTCTTACAACTTTTCCACTACCAATTGCAACAAGAATATTTGATATCTTTATGTCTGAG
Seq C2 exon
AGTAAAGAAGAAGTGATGGCAGCACGGCTCCGTGAGGCAGACAGCATAGCAGCTGTGGCTGAACTCCAGCAGCACATTGCTGAATTAGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935_MULTIEX1-5/18=C1-17
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.297
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=FE(23.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGACAAGGTTGCAGGAA
R:
CGTGCTGCCATCACTTCTTCT
Band lengths:
252-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]