HsaEX0023377 @ hg38
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92677158-92694388:-
Coord C1 exon
chr1:92694299-92694388
Coord A exon
chr1:92693802-92693899
Coord C2 exon
chr1:92677158-92677218
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATTGTATCTTAGCAC
3' ss Score
6.07
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTTTAGAAATAGTGTTTCGTGTAGGATTAGCACTTCTTCAGATGAATCAGGCAGAACTGATGCAACTTGACATGGAAGGGATGTTACAG
Seq A exon
CACTTTCAAAAGGTCATTCCACATCAGTTTGATGGTGTCCCAGACAAGCTAATCCAAGCAGCTTACCAAGTCAAATACAATTCAAAAAAAATGAAAAA
Seq C2 exon
GCTTGAAAAGGAATACACTACAATAAAAACGAAAGAAATGGAAGAGCAAGTTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-'38-84,'38-82,39-84
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATAGTGTTTCGTGTAGGATTAGC
R:
TAATTTCAACTTGCTCTTCCATTTCT
Band lengths:
143-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development