MmuEX6019379 @ mm9
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:108242565-108244910:-
Coord C1 exon
chr5:108244821-108244910
Coord A exon
chr5:108244630-108244727
Coord C2 exon
chr5:108242565-108242625
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTATTATTTCTTAGCAC
3' ss Score
6.59
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTTTGGAAATAGTGTTTCGAGTAGGATTAGCGCTTCTTCAGATGAATCAGGCAGAATTAATGCAACTTGACATGGAAGGGATGTTACAG
Seq A exon
CACTTTCAGAAGGTCATTCCACATCAGTTTGATGGTGGCCCAGAAAAATTAATCCAGTCAGCTTACCAAGTCAAATACAACTCAAAAAAAATGAAAAA
Seq C2 exon
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAACAAGGTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.202
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
A:
PF138511=GAS=PU(16.4=54.5)
C2:
PF138511=GAS=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGGAAATAGTGTTTCGAGT
R:
TTCACCTTGTTCTTCCATTTCTTT
Band lengths:
145-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: