DreEX6022145 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29052421-29052847:-
Coord C1 exon
chr6:29052758-29052847
Coord A exon
chr6:29052577-29052674
Coord C2 exon
chr6:29052421-29052481
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACATTTTCACTCTGTTACAGCAT
3' ss Score
9.54
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGTTTAGAGATAGTGTTTCGTGTGGGGATGGCCATCCTGCAGATGAATCAGGCTGAGCTCATGCAGTTGGACATGGAGGGAATGTTGCAG
Seq A exon
CATTTTCAGAAGGTCATCCCTCATCAGCTGGACAGTGGACCAGACAAAGTCATCCAGGCTGCTTATCAAGTCAAGTACAATGCCAAGAAAATGAAAAA
Seq C2 exon
ATTGGAAAAGGAGTACACTACAATCAAAACAAAGGAGATGGAGGAACAGGTGGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'22-17,'22-16,23-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
A:
PF138511=GAS=PU(16.1=54.5)
C2:
PF138511=GAS=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTAGAGATAGTGTTTCGTGTGG
R:
CTTGATCTCCACCTGTTCCTCC
Band lengths:
151-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]