BtaEX0013420 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50938849-50948288:+
Coord C1 exon
chr3:50938849-50938992
Coord A exon
chr3:50940136-50940233
Coord C2 exon
chr3:50948228-50948288
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTGTTGTATCTTAGCAC
3' ss Score
8.22
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGCACCTTCCAGAGCTCTTTGTGCATTTTCAGTCTCAGAGTTTTCATACCTCAATGTATGCATCATCATGGTTTCTGACAATCTTCCTTACAACTTTTCCACTACCAATTGCAACAAGGATATTTGATATCTTTATGTCTGAG
Seq A exon
CACTTTCAGAAGGTCATTCCACATCAGTTTGATGGTGGTCCAGACAAATTAATCCAGGCAGCTTACCAAGTCAAGTATAACTCTAAAAAAATGAAAAA
Seq C2 exon
GCTTGAAAAGGAATATACTACAATAAAAACTAAAGAAATGGAAGAACAAGTTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(23.2=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCATTTTCAGTCTCAGAGT
R:
TCAACTTGTTCTTCCATTTCTTTAGT
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development