RnoEX6041414 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2953528-2955913:+
Coord C1 exon
chr14:2953528-2953617
Coord A exon
chr14:2953710-2953807
Coord C2 exon
chr14:2955853-2955913
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTATTATTTCTTAGCAC
3' ss Score
6.59
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTTTAGAAATAGTGTTTCGAGTAGGATTAGCACTTCTTCAGATGAATCAGGCAGAATTAATGCAACTTGACATGGAAGGGATGTTACAG
Seq A exon
CACTTCCAGAAGGTCATTCCACATCAGTTTGATGGTGGCCCAGAAAAATTAATCCAGTCAGCTTACCAAGTCAAATACAACTCAAAAAAAATGAAAAA
Seq C2 exon
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAGCAAGGTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'33-31,'33-26,34-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.142
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGTGTTTCGAGTAGGATTAGCAC
R:
TTTAATTTCACCTTGCTCTTCCAT
Band lengths:
143-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]