GgaEX0008385 @ galGal3
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14772057-14773651:+
Coord C1 exon
chr8:14772057-14772146
Coord A exon
chr8:14772242-14772339
Coord C2 exon
chr8:14773591-14773651
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTACTCTGATTGCTTTTAGCAC
3' ss Score
6.68
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGTTTAGAGATAGTATTTCGAGTAGGTTTAGCACTACTTCAGACAAACCAAGCAGAATTGCTGCAACTTGACATGGAAGGGATGTTACAG
Seq A exon
CACTTTCAAAAGGTCATTCCACATCAGTTTGACAGTGGTCCAGACAAATTAATCCAAGCATCTTACCAAGTCAAATACAATGCAAAAAAGATGAAAAA
Seq C2 exon
GTTAGAAAAGGAATACACTACAATAAAAACAAAAGAAATGGAAGAACAAGTTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(9.9=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTATTTCGAGTAGGTTTAGCACT
R:
TCAACTTGTTCTTCCATTTCTTTTGT
Band lengths:
135-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]