HsaEX0023353 @ hg38
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr1:92704555-92785106:-
Coord C1 exon
chr1:92784836-92785106
Coord A exon
chr1:92736398-92736627
Coord C2 exon
chr1:92704555-92704744
Length
230 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATTTTTGTCCTTAGGTG
3' ss Score
12.4
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCTCTCCTGACGCGGCCGGGCCGGACCCCGGAGGAACCAGCTGGCCAGCTGGCAAGGGGCTGGCTGCAGTTCCGACAGCGGCGGTGCCGGGAGGGGTAGGTGAGGGTCGCGAGGCGGCCCTGAGCTTCTGAGTGAGCGTGGTGCTTTTGGGAACTCGGGACGGGCGACCCGTGGAGCCAGGAGCGGGGCCGAGGCGCTGAGACGCGGCGGCGCGGCTGCCGGCTGGATGGGAAGTTAATGTTTACGGCGAAGTCTACTCAACGTTTCCAAG
Seq A exon
GTGGCGACAGACAAAGTTGCAGAAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTACTTCATTACATACCACATCCTCATCTACCACACTATCAACACCAGCCCTTTCACCATCTTCCCCATCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAAGAACAGAATAG
Seq C2 exon
ATTGTTAGAAACGGATAGTAAGTCTTTAAGATCTGTAAATGGGTCAAGAAGAAACAGTGGCTCTTCTCTTGTGTCGAGTTCATCAGCCTCTAGCAACCTCAGTCACCTTGAAGAAGATTCTTGGATTCTTTGGGGAAGAATTGTTAATGAATGGGAAGATGTACGCAAAAAGAAGGAAAAGCAAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-'2-72,'2-48,21-72
Average complexity
C2
Mappability confidence:
98%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.625 C2=0.389
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGCAGTTCCGACAG
R:
GAGGCTGATGAACTCGACACA
Band lengths:
302-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development