RnoEX0033411 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2898248-2944311:+
Coord C1 exon
chr14:2898248-2898348
Coord A exon
chr14:2924636-2924865
Coord C2 exon
chr14:2944122-2944311
Length
230 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTCCTTACTCTTAGGTG
3' ss Score
10.56
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGAGGTCCAGCCGGCCGAGGCGGTGGGAGGCGGCGGCGGCGGGGCCGCCGGCTGGATGGGAAGTTCATGTTGACGGCGGAGTCCACCCCAGGTTTCCAAG
Seq A exon
GTGGCGACAGACAAGGTGGCAGAAAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTCTCGCACACAGTCAGTCAGATGGCCAGCCAGGTGGCAAGTCCATCAGCCTCACTACATACCACATCCTCATCTACCACACTGTCAACACCAACACAGTCACCATCTTCCCCATCAAAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAGCTGGAGGAACAAAACAG
Seq C2 exon
ATTAATAGAGACAGACAGTAAGTCTTTAAGATCAGTGAATGGGTCAAGAAGAAACAGCGGCTCCTCTCTTGTTTCAAGTTCATCGGCCTCCAGCAACCTCAGCCACTTGGAGGAAGACTCTTGGATTCTATGGGGAAGAATTGTGAATGAGTGGGATGATGTACGCAAGAAGAAAGAAAAGCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'8-17,'8-10,20-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.636 C2=0.438
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGCTGGATGGGAAGTT
R:
CTTCACTTGCTTTTCTTTCTTCTTGC
Band lengths:
244-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]