BtaEX6016592 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50905459-50928958:+
Coord C1 exon
chr3:50905459-50905512
Coord A exon
chr3:50906717-50906946
Coord C2 exon
chr3:50928769-50928958
Length
230 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATTTTTGTACTTAGGTG
3' ss Score
10.13
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TCTTTCTTGGGGATTCTTCCCTCAACAATAAGAACTCCCTCATCCCATTCCATG
Seq A exon
GTGGCGACAGACAAGGTTGCAGAAAAGTTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTGTCACATACAGTCAGCCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCTTCCTTACACACTACATCCTCGTCTACCACACTGTCAACACCAGCCCTTTCACCATCCTCACCGTCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAGGAACAAAATAG
Seq C2 exon
ATTGTTAGAGACAGATAGTAAGTCTTTAAGATCTGTAAATGGATCAAGAAGGAACAGTGGCTCCTCCCTGGTGTCAAGTTCATCAGCCTCTAGCAACCTCAGTCACCTTGAAGAAGACTCTTGGATTCTTTGGGGAAGAGTTGTTAATGAATGGGAAGATGTGCGCAAAAAGAAGGAGAAACAAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'5-2,'5-0,6-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.571 C2=0.359
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCCCTCAACAATAAGAACTCCC
R:
AACTTGTTTCTCCTTCTTTTTGCGC
Band lengths:
228-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]