HsaEX0023353 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:93170112-93250663:-
Coord C1 exon
chr1:93250393-93250663
Coord A exon
chr1:93201955-93202184
Coord C2 exon
chr1:93170112-93170301
Length
230 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATTTTTGTCCTTAGGTG
3' ss Score
12.4
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCTCTCCTGACGCGGCCGGGCCGGACCCCGGAGGAACCAGCTGGCCAGCTGGCAAGGGGCTGGCTGCAGTTCCGACAGCGGCGGTGCCGGGAGGGGTAGGTGAGGGTCGCGAGGCGGCCCTGAGCTTCTGAGTGAGCGTGGTGCTTTTGGGAACTCGGGACGGGCGACCCGTGGAGCCAGGAGCGGGGCCGAGGCGCTGAGACGCGGCGGCGCGGCTGCCGGCTGGATGGGAAGTTAATGTTTACGGCGAAGTCTACTCAACGTTTCCAAG
Seq A exon
GTGGCGACAGACAAAGTTGCAGAAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTACTTCATTACATACCACATCCTCATCTACCACACTATCAACACCAGCCCTTTCACCATCTTCCCCATCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAAGAACAGAATAG
Seq C2 exon
ATTGTTAGAAACGGATAGTAAGTCTTTAAGATCTGTAAATGGGTCAAGAAGAAACAGTGGCTCTTCTCTTGTGTCGAGTTCATCAGCCTCTAGCAACCTCAGTCACCTTGAAGAAGATTCTTGGATTCTTTGGGGAAGAATTGTTAATGAATGGGAAGATGTACGCAAAAAGAAGGAAAAGCAAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-'1-11,'1-7,7-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.654 C2=0.395
Domain overlap (PFAM):
C1:
NA
A:
PF102394=DUF2465=FE(76.8=100),PF065348=RGM_C=PU(61.5=72.7)
C2:
PF065348=RGM_C=PD(1.1=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGCAGTTCCGACAG
R:
GAGGCTGATGAACTCGACACA
Band lengths:
302-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)