HsaEX0023354 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:93201955-93250663:-
Coord C1 exon
chr1:93250393-93250663
Coord A exon
chr1:93239463-93239580
Coord C2 exon
chr1:93201955-93202184
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTGGAGACAGGGT
3' ss Score
2.52
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCTCTCCTGACGCGGCCGGGCCGGACCCCGGAGGAACCAGCTGGCCAGCTGGCAAGGGGCTGGCTGCAGTTCCGACAGCGGCGGTGCCGGGAGGGGTAGGTGAGGGTCGCGAGGCGGCCCTGAGCTTCTGAGTGAGCGTGGTGCTTTTGGGAACTCGGGACGGGCGACCCGTGGAGCCAGGAGCGGGGCCGAGGCGCTGAGACGCGGCGGCGCGGCTGCCGGCTGGATGGGAAGTTAATGTTTACGGCGAAGTCTACTCAACGTTTCCAAG
Seq A exon
GGTCTTGCTCTGTTGCCCAGACTGTAGTGCAGTGGGGTGATCATGGCTTACTGCAACCTTGACCTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
GTGGCGACAGACAAAGTTGCAGAAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTACTTCATTACATACCACATCCTCATCTACCACACTATCAACACCAGCCCTTTCACCATCTTCCCCATCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAAGAACAGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-'1-7,'1-5,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.375 C2=0.654
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102394=DUF2465=FE(76.8=100),PF065348=RGM_C=PU(61.5=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCTTCTGAGTGAGCGTG
R:
ACTGGCCATCTGACTGACTGT
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)