HsaEX0023371 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:93142715-93202184:-
Coord C1 exon
chr1:93201955-93202184
Coord A exon
chr1:93170112-93170301
Coord C2 exon
chr1:93142715-93142775
Length
190 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTAATTATATTTTAGATT
3' ss Score
7.56
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTGGCGACAGACAAAGTTGCAGAAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTACTTCATTACATACCACATCCTCATCTACCACACTATCAACACCAGCCCTTTCACCATCTTCCCCATCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAAGAACAGAATAG
Seq A exon
ATTGTTAGAAACGGATAGTAAGTCTTTAAGATCTGTAAATGGGTCAAGAAGAAACAGTGGCTCTTCTCTTGTGTCGAGTTCATCAGCCTCTAGCAACCTCAGTCACCTTGAAGAAGATTCTTGGATTCTTTGGGGAAGAATTGTTAATGAATGGGAAGATGTACGCAAAAAGAAGGAAAAGCAAGTTAAG
Seq C2 exon
GCTTGAAAAGGAATACACTACAATAAAAACGAAAGAAATGGAAGAGCAAGTTGAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208_MULTIEX1-2/18=C1-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.395 C2=0.105
Domain overlap (PFAM):
C1:
PF102394=DUF2465=FE(76.8=100),PF065348=RGM_C=PU(61.5=72.7)
A:
PF065348=RGM_C=PD(1.1=33.3)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGCTCTACTCTCTCATGG
R:
ACTTGCTCTTCCATTTCTTTCGT
Band lengths:
256-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)