BtaEX0013416 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:50906717-50930097:+
Coord C1 exon
chr3:50906717-50906946
Coord A exon
chr3:50928769-50928958
Coord C2 exon
chr3:50929873-50930097
Length
190 bp
Sequences
Splice sites
3' ss Seq
AATTTTTAATTATATTTTAGATT
3' ss Score
8.05
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTGGCGACAGACAAGGTTGCAGAAAAGTTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTGTCACATACAGTCAGCCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCTTCCTTACACACTACATCCTCGTCTACCACACTGTCAACACCAGCCCTTTCACCATCCTCACCGTCACAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAACTGGAGGAACAAAATAG
Seq A exon
ATTGTTAGAGACAGATAGTAAGTCTTTAAGATCTGTAAATGGATCAAGAAGGAACAGTGGCTCCTCCCTGGTGTCAAGTTCATCAGCCTCTAGCAACCTCAGTCACCTTGAAGAAGACTCTTGGATTCTTTGGGGAAGAGTTGTTAATGAATGGGAAGATGTGCGCAAAAAGAAGGAGAAACAAGTTAAG
Seq C2 exon
GAACTTGTTCGTAAAGGGATACCCCATCATTTTAGAGCAATAGTTTGGCAACTTTTGTGCAGTGCACAAAGTATGCCAATTAAGGATCAGTATTCAGAACTCCTGAAAATGACCTCACCTTGTGAAAAATTGATCCGAAGGGACATTGCTAGAACTTACCCTGAACACAATTTTTTTAAGGAAAAAGATAGCCTTGGACAGGAAGTTTTGTTTAATGTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-'6-4,'6-2,10-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.359 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTCACATACAGTCAGCC
R:
TGGCATACTTTGTGCACTGCA
Band lengths:
251-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development