GgaEX1023234 @ galGal4
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13010148-13016813:+
Coord C1 exon
chr8:13010148-13010386
Coord A exon
chr8:13013450-13013639
Coord C2 exon
chr8:13016589-13016813
Length
190 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGGTTTCTTTGCAGGCT
3' ss Score
9.35
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
TCATCACAGGTGGCGACAGACAAGGTTGCAGGAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACTGTATCGCACACCGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCCTTACACACTACATCCTCCTCTACCACTCTGTCTACACCTGCGTTATCACCATCCTCACCAGCGCAGCTGAGTCCAGACGACCTAGAATTACTGGCTAAACTTGAGGAGCAGAACAG
Seq A exon
GCTCCTAGAAACAGATAGCAAATCCTTACGATCAGTAAATGGGTCAAGAAGAAATAGTGGATCTTCTCTTGTATCTAGTTCATCAGCTTCTAGCAATCTCAGCCACCTTGAAGAAGACTCGTGGATCCTGTGGGGGAGAATTGTGAATGAATGGGAAGATGTACGGAAAAAGAAAGAAAAGCAAGTTAAG
Seq C2 exon
GAGCTCGTTCGAAAAGGGATACCTCATCATTTCAGAGCAATTGTTTGGCAGCTTCTGTGTAGTGCTCAAAGCATGCCAATAAAGGATCAGTATTCAGAGCTTTTGAAAATGACATCTCCTTGTGAGAAACTAATAAGAAGGGACATTGCTAGAACATATCCTGAACATGATTTCTTTAAAGAGAAAGACAGCCTTGGGCAGGAGGTTTTATTCAATGTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935_MULTIEX1-1/18=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.359 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACTGTATCGCACACCGT
R:
GCACTACACAGAAGCTGCCAA
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]