RnoEX0033413 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2924636-2950658:+
Coord C1 exon
chr14:2924636-2924865
Coord A exon
chr14:2944122-2944311
Coord C2 exon
chr14:2950533-2950658
Length
190 bp
Sequences
Splice sites
3' ss Seq
ACAGTTTTAATTCTGTTTAGATT
3' ss Score
6.57
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTGGCGACAGACAAGGTGGCAGAAAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTCTCGCACACAGTCAGTCAGATGGCCAGCCAGGTGGCAAGTCCATCAGCCTCACTACATACCACATCCTCATCTACCACACTGTCAACACCAACACAGTCACCATCTTCCCCATCAAAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAGCTGGAGGAACAAAACAG
Seq A exon
ATTAATAGAGACAGACAGTAAGTCTTTAAGATCAGTGAATGGGTCAAGAAGAAACAGCGGCTCCTCTCTTGTTTCAAGTTCATCGGCCTCCAGCAACCTCAGCCACTTGGAGGAAGACTCTTGGATTCTATGGGGAAGAATTGTGAATGAGTGGGATGATGTACGCAAGAAGAAAGAAAAGCAAGTGAAG
Seq C2 exon
ATGCCAGAAGAAGAAGCTTTTTGCGTATTTTTTAAATTAATGCAAGACTACCGACTTCGTGAACTGTTTAAGCCAAGTATGGCAGAGTTGGGCCTGTGCATGTACCAGTTTGAATGCATGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039_MULTIEX1-3/5=2-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.438 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGTCAGTCAGATGGCC
R:
GCCCAACTCTGCCATACTTGG
Band lengths:
257-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]