DreEX6022140 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29054282-29071821:-
Coord C1 exon
chr6:29071595-29071821
Coord A exon
chr6:29055980-29056169
Coord C2 exon
chr6:29054282-29054506
Length
190 bp
Sequences
Splice sites
3' ss Seq
TATGATTTTTTTATATCCAGGTT
3' ss Score
8.4
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGGCGACAGACAAGGTAACAGGTAAGCTGAGTTCGACTCTTTCATGGGTGAAGAACTCAGTGTCGCACACGGTGAGTCAGATGGCTAGTCAGGTGGCCACTCCGTCTTCGCTACACACCACTGTGGCTTCATCCACTGCCTCGCTGTCCTCACCCTCCTCAGCCTCGCCGACTCAGCTCAGCCCAGATGATGTGGAGCTGCTGGCCAAACTAGAGGAGCAGAACAG
Seq A exon
GTTGTTGGAGACGGACAGTAAATCTTTACGCTCTGTGAATGGATCTCGAAGGAACAGTGGCTCTTCACTGGTGTCTAGTTCATCCGCCTCCTCCAACTTGTCGCATTTGGAGGAGGATTCGTGGATCCTGTGGGGACGCATTGTCAACGAGTGGGAAGATGTGCGGAAAAAGAAGGAAAAACAGCTAAAG
Seq C2 exon
GAACTGGTTAGGAAAGGTGTTCCGCATCACTTTCGAGCGATAGTGTGGCAGTTGTTGTGCAATGCCCAGAACCTACCCATAAAGGAGCAGTACTCTGAGCTGCTGAAGATGACCTCGCCCTGTGAAAAACTCATTCGCAGAGATATTGCCCGTACCTACCCCGAGCACGAGTTCTTTAAAGAGAAGGACAGTCTGGGTCAGGAGGTGCTCTTTAATGTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'10-10,'10-7,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=0.344 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=PU(32.5=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGCTCAGCCCAGATGAT
R:
CCTGACCCAGACTGTCCTTCT
Band lengths:
258-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]