MmuEX0017498 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107819604-107842300:-
Coord C1 exon
chr5:107842071-107842300
Coord A exon
chr5:107821705-107821894
Coord C2 exon
chr5:107819604-107819678
Length
190 bp
Sequences
Splice sites
3' ss Seq
ACACCTTTAATTCTGTTTAGATT
3' ss Score
7.28
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTGGCGACAGACAAGGTGGCAGAAAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCACTACACACTACATCCTCATCTACCACACTGTCAACACCAACACAGTCACCATCTTCCCCATCAAAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAGCTGGAGGAACAAAACAG
Seq A exon
ATTAATAGAGACAGACAGTAAGTCTTTAAGATCAGTGAATGGGTCAAGAAGAAACAGTGGTTCCTCTCTTGTATCAAGTTCATCAGCCTCCAGCAACCTCAGCCACCTGGAGGAAGACTCTTGGATTCTCTGGGGAAGAATTGTGAATGAATGGGATGATGTACGCAAGAAGAAAGAAAAGCAAGTGAAG
Seq C2 exon
GCATACTCCTTAGTGGACCGTGAGGTTGGTTACTGTCAGGGCAGTGCTTTCATCGTTGGATTGTTGCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-'24-27,'24-21,27-27=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=0.403 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGACAAGGTGGCAGAAA
R:
ACCAACCTCACGGTCCACTAA
Band lengths:
256-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types