DreEX0030975 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29055980-29095030:-
Coord C1 exon
chr6:29094795-29095030
Coord A exon
chr6:29071595-29071821
Coord C2 exon
chr6:29055980-29056169
Length
227 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTTCTGCCCAAAGGTG
3' ss Score
9.42
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTCCACGTAATGCACTTCTAATAGGCTGGATAGCTGCGTCAGTGATGCATTGTTGGAGAGTGAAAGGTGTGTCCTACATCAGAATGAAATGAGATCAACGTCAGCACGACCAAGGAAAACCAGAAAAGTTAGTTGCTGTGTGACATCTTTTTACCATCCATGTATCGGAACTGCCTGTCAAGTCACTGACTTTTAAAGGATATCTACATTTTGGAAATGACCCAGCCATCTAATG
Seq A exon
GTGGCGACAGACAAGGTAACAGGTAAGCTGAGTTCGACTCTTTCATGGGTGAAGAACTCAGTGTCGCACACGGTGAGTCAGATGGCTAGTCAGGTGGCCACTCCGTCTTCGCTACACACCACTGTGGCTTCATCCACTGCCTCGCTGTCCTCACCCTCCTCAGCCTCGCCGACTCAGCTCAGCCCAGATGATGTGGAGCTGCTGGCCAAACTAGAGGAGCAGAACAG
Seq C2 exon
GTTGTTGGAGACGGACAGTAAATCTTTACGCTCTGTGAATGGATCTCGAAGGAACAGTGGCTCTTCACTGGTGTCTAGTTCATCCGCCTCCTCCAACTTGTCGCATTTGGAGGAGGATTCGTGGATCCTGTGGGGACGCATTGTCAACGAGTGGGAAGATGTGCGGAAAAAGAAGGAAAAACAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-'3-7,'3-5,10-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.627 C2=0.344
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCAGTGATGCATTGTTGG
R:
TGGAGGAGGCGGATGAACTAG
Band lengths:
295-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]