GgaEX6044245 @ galGal3
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
NA
Coordinates
chr8:14756146-14765420:+
Coord C1 exon
chr8:14756146-14756231
Coord A exon
chr8:14761938-14762167
Coord C2 exon
chr8:14765231-14765420
Length
230 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTTGTCATCACAGGTG
3' ss Score
9.12
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGCGGGAGGCTGCTCGGCGGAGGTCGGCGGCGGGCTACGGGGGACGCCGATGCTCGCACCTCTCCGTCGCGGGCGACGCTTCCAAG
Seq A exon
GTGGCGACAGACAAGGTTGCAGGAAAGCTGAGCTCTACTCTCTCATGGGTGAAGAACACTGTATCGCACACCGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCCTTACACACTACATCCTCCTCTACCACTCTGTCTACACCTGCGTTATCACCATCCTCACCAGCGCAGCTGAGTCCAGACGACCTAGAATTACTGGCTAAACTTGAGGAGCAGAACAG
Seq C2 exon
GCTCCTAGAAACAGATAGCAAATCCTTACGATCAGTAAATGGGTCAAGAAGAAATAGTGGATCTTCTCTTGTATCTAGTTCATCAGCTTCTAGCAATCTCAGCCACCTTGAAGAAGACTCGTGGATCCTGTGGGGGAGAATTGTGAATGAATGGGAAGATGTACGGAAAAAGAAAGAAAAGCAAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935-'2-2,'2-0,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.760 C2=0.391
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGATGCTCGCACCTCT
R:
AACTTGCTTTTCTTTCTTTTTCCGT
Band lengths:
228-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]