HsaALTD1006050-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000088247 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr19:6415380-6415684:-
Coord C1 exon
chr19:6415609-6415684
Coord A exon
NA
Coord C2 exon
chr19:6415380-6415457
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CTGTCTCGGCGCCCGCACAGGCC
3' ss Score
5.95
Exon sequences
Seq C1 exon
TACTCACACTACTACCAGCAGCCCCCGGGCCCCGTCCCCGGCCCCGCACCGGCCCCTGCGGCCCCACCGGCTCAGG
Seq A exon
NA
Seq C2 exon
GCCAGCAGCCCCAGCAGCCCGGAGCACCCCCACAGCAGGACTACACGAAGGCTTGGGAGGAGTACTACAAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088247-33-29,34-29-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=NA C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PD(18.5=18.5)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACACTACTACCAGCAGCC
R:
TTGCTTCTTGTAGTACTCCTCCCA
Band lengths:
151-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains