HsaALTD1006050-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000088247 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr19:6415380-6415684:-
Coord C1 exon
chr19:6415609-6415684
Coord A exon
chr19:6415534-6415608
Coord C2 exon
chr19:6415380-6415457
Length
75 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTGTCTCGGCGCCCGCACAGGCC
3' ss Score
5.95
Exon sequences
Seq C1 exon
TACTCACACTACTACCAGCAGCCCCCGGGCCCCGTCCCCGGCCCCGCACCGGCCCCTGCGGCCCCACCGGCTCAGG
Seq A exon
GTGAGCCCCCTCAGCCCCCACCCACCGGCCAGTCGGACTACACTAAGGCCTGGGAAGAGTATTACAAAAAGATCG
Seq C2 exon
GCCAGCAGCCCCAGCAGCCCGGAGCACCCCCACAGCAGGACTACACGAAGGCTTGGGAGGAGTACTACAAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088247-33-29,34-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=NA C2=0.982
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PD(18.5=18.5)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACACTACTACCAGCAGCC
R:
TTGCTTCTTGTAGTACTCCTCCCA
Band lengths:
151-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains