MmuALTD1002710-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000007670 | Khsrp
Description
KH-type splicing regulatory protein [Source:MGI Symbol;Acc:MGI:1336214]
Coordinates
chr17:57023059-57023413:-
Coord C1 exon
chr17:57023329-57023413
Coord A exon
chr17:57023213-57023328
Coord C2 exon
chr17:57023059-57023136
Length
116 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CACCCTACCCTGTTCCTCAGGCC
3' ss Score
7.78
Exon sequences
Seq C1 exon
ACAAAGCTGCTGCAGCGGCTACAGATCCTAATGCTGCCTGGGCTGCCTACTACTCTCACTACTACCAGCAACCCCCAGGTCCTGT
Seq A exon
GCCAGGCCCTGCCCCAGCCCCTGCAGCCCCACCTGCACAGGGGGAACCCCCCCAGCCTCCACCCACTGGCCAATCAGACTACACCAAGGCTTGGGAAGAGTATTACAAAAAAATTG
Seq C2 exon
GCCAGCAGCCCCAGCAGCCTGGGGCACCCCCACAGCAGGACTACACCAAGGCCTGGGAGGAGTACTACAAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007670-27-26,28-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(77.8=30.9)
A:
NA
C2:
PF090055=DUF1897=PD(18.5=18.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCGGCTACAGATCCTA
R:
CTTGCTTCTTGTAGTACTCCTCCC
Band lengths:
154-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types