HsaALTD1006336-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000089558 | KCNH4
Description
potassium voltage-gated channel subfamily H member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr17:42163228-42163958:-
Coord C1 exon
chr17:42163809-42163958
Coord A exon
chr17:42163606-42163808
Coord C2 exon
chr17:42163228-42163334
Length
203 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GAGCACTGCCCTGTTCCCAGGAT
3' ss Score
5.39
Exon sequences
Seq C1 exon
CCCCGCTCAGAAAGCCTCGGCTCCTCCTCAGACAAGACGCTGCCATCCATCACAGAGGCCGAGAGTGGCGCGGAGCCTGGGGGTGGTCCCAGGCCCCGACGGCCCCTCCTGCTGCCCAACCTCAGCCCAGCACGGCCTCGGGGCTCCCTG
Seq A exon
GTCAGCCTTTTGGGCGAGGAGCTGCCCCCATTCTCAGCCCTTGTCTCCTCTCCTTCCTTATCCCCATCCCTGTCCCCTGCCCTGGCTGGCCAGGGCCACAGTGCCTCCCCTCACGGCCCCCCCAGGTGCTCTGCTGCCTGGAAGCCCCCTCAGCTTCTCATTCCCCCACTGGGAACCTTTGGACCTCCGGACCTCAGTCCCCG
Seq C2 exon
GATAGTGGATGGCATTGAGGACTCTGGCAGCACAGCTGAGGCCCCTTCATTCCGATTCAGCAGGAGGCCTGAACTGCCAAGGCCCCGCTCCCAGGCGCCCCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089558-15-16,16-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCTCCTCCTCAGACAAG
R:
GGGCCTTGGCAGTTCAGG
Band lengths:
220-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains