MmuALTD1022344-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000035355 | Kcnh4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:MGI Symbol;Acc:MGI:2156184]
Coordinates
chr11:100745236-100745967:-
Coord C1 exon
chr11:100745818-100745967
Coord A exon
chr11:100745615-100745817
Coord C2 exon
chr11:100745236-100745342
Length
203 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GAACACTCCTCTACCCTCAGGAT
3' ss Score
7.54
Exon sequences
Seq C1 exon
GCACGCTCCGACACTCTTGGTTCCTCCTCAGACAAGACTCTGCCATCCATCACAGAAACCGAGGGTGGCACGGAGCCTGGGGCTGGTTCCAAGCCCCGTCGGCCCCACCTGCTGCCCAACCTCAGTCCAGCACGACCTCGGGGGTCCCTG
Seq A exon
GTCAGCCTTTTGGGCGAGGAGCTGCCCCCATTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAACTCCTTCCCCTGCCCTGGCTGGCCGGGGTCAGAGTCCCTCCCCGCACGGCCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTCCTCATTCCCCCACTGGGAACATTTGGACCTCCGGACCTCAGTCCCCG
Seq C2 exon
GATCGTGGATGGCATTGAAGACTCCAGTAACACAGCTGAGGCTCCTACATTCCGCTTCAGCAAGAGGCCAGAGCCCACCAGAACTCGCTCACAGGCTCCCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035355-16-18,17-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGACACTCTTGGTTCCTC
R:
CTGAAGGGGGAGCCTGTGAG
Band lengths:
252-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types