RnoALTD0015126-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88652510-88653230:-
Coord C1 exon
chr10:88653081-88653230
Coord A exon
chr10:88652878-88653080
Coord C2 exon
chr10:88652510-88652616
Length
203 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GAACACTACTCTACCCTCAGGAT
3' ss Score
6.42
Exon sequences
Seq C1 exon
GCACGCTCCGACACTCTTGGTTCCTCCTCAGACAAGACTCTGCCATCCATCACAGAAACCGAGGGTGGCATGGAGCCTGGGGCTGGTTCCAAGCCCCGTCGGCCCCTCCTGCTGCCCAACCTCAGTCCAGCACGACCTCGGGGGTCCCTG
Seq A exon
GTCAGCCTTTTGGGCGAAGAGCTGCCCCCATTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAACTCCTTCCCCTGCCCTGGCTGGCCGGGGTTCAAGTCCCTCCCTGCACGGGCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTCCTCACCCCCCCACTGGGAACATTTGGACCTCCGGACCTCAGTCCCCG
Seq C2 exon
GATCGTGGATGGCATTGAGGACTCCAGTAACACAGCTGAGGCTCCTACATTCCGGTTCAGCAAGAGGCCGGAGCCCACCAGAACCCGTTCACAGGCTCCCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-16-16,17-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGACACTCTTGGTTCCTC
R:
CTGAAAGGGGAGCCTGTGAAC
Band lengths:
252-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]