RnoINT0077754 @ rn6
Intron Retention
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88652510-88653230:-
Coord C1 exon
chr10:88652878-88653230
Coord A exon
chr10:88652617-88652877
Coord C2 exon
chr10:88652510-88652616
Length
261 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GAACACTACTCTACCCTCAGGAT
3' ss Score
6.42
Exon sequences
Seq C1 exon
GCACGCTCCGACACTCTTGGTTCCTCCTCAGACAAGACTCTGCCATCCATCACAGAAACCGAGGGTGGCATGGAGCCTGGGGCTGGTTCCAAGCCCCGTCGGCCCCTCCTGCTGCCCAACCTCAGTCCAGCACGACCTCGGGGGTCCCTGGTCAGCCTTTTGGGCGAAGAGCTGCCCCCATTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAACTCCTTCCCCTGCCCTGGCTGGCCGGGGTTCAAGTCCCTCCCTGCACGGGCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTCCTCACCCCCCCACTGGGAACATTTGGACCTCCGGACCTCAGTCCCCG
Seq A exon
GTGAGATGCCAGCCTTCCTTACCTTTCCCATATCCCTGCTGGCTTCCAGAACCTTCTTTGGGCTCCATTCCCAGCGCTCCAACCAGTGCTCCTTCCTGTCTCTGCCCCATCTGCCTTTCCAACCACAGCTTGCAATCCCATTCTGCTTTGACCACTGTTCTTCCCCAGTTTCCTGCCTCTGCTGCCCTCATTGACCCTCTGCCTACCCTGTTCCGCCCCGCACTCTCCCTGTGGTGCTGATGAACACTACTCTACCCTCAG
Seq C2 exon
GATCGTGGATGGCATTGAGGACTCCAGTAACACAGCTGAGGCTCCTACATTCCGGTTCAGCAAGAGGCCGGAGCCCACCAGAACCCGTTCACAGGCTCCCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790:ENSRNOT00000025518:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCAGTCCAGCACGAC
R:
GCTGAACCGGAATGTAGGAGC
Band lengths:
298-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]