GgaINT0142790 @ galGal3
Intron Retention
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4500787-4501225:-
Coord C1 exon
chr27:4500942-4501225
Coord A exon
chr27:4500857-4500941
Coord C2 exon
chr27:4500787-4500856
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCTCACTGCCCCCCCGCAGAGC
3' ss Score
10.33
Exon sequences
Seq C1 exon
TCGGACAGCGGCCCCGGCCCGGAGCAGTCCCTCCCCTGCATCGCGGAGGACGAGGAAGAGGCGGATGAGGTCTTCCAGCGATCGCCCCCCGCCGTCGCCCCCCGCGAACCGCTGCTGCCTCCACGTAGCAGCCCCGCGCGGCTCCCCGGCGCTCCTCGCGGAGACGAGCGCGGCATCCCCACGGCGCGGCCCCGGGGGGAGGCGGGGGGCGGCGGGGGACGGAGGGCGGCTCGGCTCCTCGGCCCCTCCCTGCACGCCCCTGGGCCCCCCGAACTCAGCCCCAG
Seq A exon
GTAAGACCGAAGGCTTCACATGTCCGGGAGGGGGCGGGGGTGGACACGGTGAGGACGAGGTTGGGTCCTCACTGCCCCCCCGCAG
Seq C2 exon
AGCGGTGGACGGGATCGAAGACGACGGGGGGATCCGGGAGGTGCGAACCTTCTGCTTCGGCGCGGCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354:ENSGALT00000005306:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACGTAGCAGCCCC
R:
TCGTCTTCGATCCCGTCCAC
Band lengths:
191-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]