BtaINT0079580 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42924752-42925468:-
Coord C1 exon
chr19:42925116-42925468
Coord A exon
chr19:42924859-42925115
Coord C2 exon
chr19:42924752-42924858
Length
257 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GACCACTGCCTCCATCCCAGGAT
3' ss Score
5.65
Exon sequences
Seq C1 exon
CCCCGCTCGGATAGCCTGGGCTCCTCCTCAGACAAGACCCAGCCATCCGTCACAGAGGCCGAGGCTGGGGCCGAGCCTGGCGGTGGTCCCAGGCCCCGGCGGCCCATCCTGCTGCCCAACCTCAGTCCAGCGCGGCCCCGGGGCTCCCTGGTCAGCCTCTTGGGGGAGGAGCTGCCCCCTTTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAGCCCCTTCCCCTGCCCTGGCTGGCCGGGGCCACAGCCCCTCCCCTCATGGCCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTTCTCATTCCCCCACTGGGAACCTTTGGACCTCCGGACCTCAGTCCCCG
Seq A exon
GTGAGATGCCAGCCTCCTCTGCCTTCCCTATACCCCTGCTGGCTTCCAGAACCTTCTCTGGGCTCTGTCCCTAGCATTCTGACCAGTGCTCCACCCCGCCCTTCCTGATCCACCACAGCTTGCAACCCCACCCCTCTGTGACGGCTGCTCCTCCCCAGCTCCCTGGTGCTGCAGCCCCTTTCACCCTCTGCCTGCTCTGCCCTGCTCTGGCCCTTACTCTCTGCCCATGGGACTGATGACCACTGCCTCCATCCCAG
Seq C2 exon
GATAGTGGATGGCATTGAGGACTCTGGCAGCACGGCAGAGGCCACTACGTTCCGGTTCAGCAGGAGGCCTGAGCACCCTAGATCTCGCTCACAGGCCCTTCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195:ENSBTAT00000005335:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGTCAGCCTCTTGG
R:
GAGCGAGATCTAGGGTGCTCA
Band lengths:
300-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development