DreINT0084822 @ danRer10
Intron Retention
Gene
ENSDARG00000061990 | kcnh4b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4b [Source:ZFIN;Acc:ZDB-GENE-121214-54]
Coordinates
chr12:13423000-13426071:+
Coord C1 exon
chr12:13423000-13423409
Coord A exon
chr12:13423410-13425964
Coord C2 exon
chr12:13425965-13426071
Length
2555 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TACCATATTGGCTTTTACAGAGT
3' ss Score
7.3
Exon sequences
Seq C1 exon
CAGAATTACCCAGACTTCAGTGTCTCAACTGAGAATAAGCGTCCATCCGTTGTAGAAAAGGCTGATGATCCAGACAAGTACTTCCATGTTTCATCTGCTTCTAGTACATGTAGGAATCTACTCCTGCCCAATCTAGGCAGCCCTGTGCGGCGAACATCATTAGGGAACCTTTTAGGAGAGGAGTTAATGCAATTCAATGCCCTACGACATTGTCGCTCACCCGTCAGGGGCTGGAGTCCAAATCCCTCTCCAAAACCTCCAAGCAAAGTACAGAAACAAACCCAGCAACCTTCATCTACGCCTAAACCCATCCATAAAACACAAACAGATTCTGGAAGTATGGCGCGCAAACCTGCCAAGCTGCTCATCCCTACTCTCAACTGCTTTGGACCACCAGATCTTAGTCCAAG
Seq A exon
GTAACATACAGTCTCACTAAAGACGGCAAACTATATTATTATTACTACATCCTCATATCAATTTTCATACCTGGCTTTTTTGGAGCATTTGTATCAGAACATGGCCACATTTCCTCTTTTCAGTTCAGTTTGTTTAGGCCAGGGGTGCTTATATATATTAATCTGACTAAAGTCATAATTGAACTAAACAGAAATGAGATTAAGATGTGAAGTATGCATGTATTAGTGGCGTTATTGAAGTAAACACTGCAATCAAAACATTACCGTCATGTAGGACTTTTCGTCATACTTTCCCACAAGATCCACACACGCGGCTGTCGGTAAAGGACCACACACACACATTGCGAAATGCGGAAGTTTTTTCTTTCCAATTGGCGTGCTTATAAAATTCCACAACACTCTCACCAGTCCTTACTCCTTATTTTCATCTAATACCCTAGTTTGTCACAGGGGCATCAATGAAATGTTCATGAGTGAATGTAAAACTGCTGAACTGCAGTTAGTCATCCAAAACTACAGGAAACTCTTTTATGAAAGCACTTCACGTAAACACCTTAATTATATTATCGTCTAATAAGCCAAATAACTAGATTACAGATGTCTACATAAACTTAGTCATTAGTTTCTTTGAAGTAAGTGAAAGATCCAGAAGGGCATCCTGCTGATTTGATTCAGAAGGGCACTTTTTTGTAATTTGGCTCACCAGTCAGGTATACATCTGTGCTAAAATATCAAGGTGAAAGTCATCATAGCTTGCGTAAAACAGACCCAGCTCCCAACCCAACTTTGAGAATAGATTAATGGCTGTATTTTTTTAATACGCGATAAGAGTCTCCGATAACGGCCCACCACTAATTTTAATATTTAAAGAAAACTTCATTCATTTATTTTTATTTCGCCTTAGTCCCTTTATTAATCTGGGGTCACCACAGTGGAATGAACCACCAACTTATCCCGCATATGTTTTATGCAACCCATCTCTGGGAAACCACACACACTCATACACTACAGACAATTTAGCCTACCCAATTCACCTGTGCCACATGTCTTTGAACTGTGGGGGAAATCAGAGCACCCGGAGAAAACCCACACGAATGCAGGGAGAACATGCAAACTCCACACAGAAACGATAACTGACCCAGCCAAGTCTCAAACCAGGAGAGGGTGCTTGCTGCAGAGCTATTTGAGGAGAGCTGAGCTCCAGCGAGGGGGAGCATGAGCTGTCGCTCCTCCTCCTGTAAGCTGTTTTAATGCGTACACCAACCCCACCCCTAACCCTACCCCCAGTGACATCACTCGTAGAAGAAGTGCAAAAAAGGTGGAGCTCAAGATTAAGCTCCCCCTCGCTGGAGCTCAGCTCTCCTCAAATAGCTCTGCAGCGAGCACCACTTGCAAACCAGCGGCCTTCTTGCTATGAGGTGACAGCACTATCTATTGCACCACTGCATCTAAAGGAACCTTTATCTTCTTAATGTTAAATTGAAACTAGTACATTTACAAATAAAAAAACAATTTTACAAACTAACTATGTACAGCAGGGCTGTTTAAACCCAGTCCTAGAGGGCTGGTATACTGTGAGTGCTCTGAGGTGGGGGAGAGGTCGACTGCATCACCTGCAGTTCGTTGAGAAGAGTAGTCTCCAGTAACCTCCAAAAAAAGTCACTAGATGCTTTTTTTTTTTTTTAATCAGCGCTAGGGGAGTCTGAAATGTCATTAAGTTGGAAACACTGGACTGGCAGTTTGAAGCGCTCACACCTCGCACATGTTCAGTATGGACGGAACGTTCCATTAATAATAGAGACCGATTTTACACCATACGACAGAAAATGTATAAAAGAGACGTATGATAAATCCAGGCTTCTTGGCATTGGTCAGGGGTCCCTAATTCCCCAGGCTAAGCGGCCGCCTACCTAGCTTATTAGTTAAGTCTGCCCTTGCATGCACTGAAGACTGATATTTGTGACTTCCTGAAAATGCATGTGCAGCTTTCTTATCTATGTGAAGCTTGCTGATCTCTTACTATGGCACTACTTTGTCCTGAACAAGCCCATTTATGCACAGTCTGAGAAAGAAGAGTACTTTAAATTAAAAGGATATCTGACTGTCTGATTTGGAGAGCGCTTTACTTGATTAACACTTTTTAGCAAACCTTGACCATTATCAATCATTGATAAATACAGAAACTGAAGTAGGCAACAGTTTTAAATGTGTCCATTTGATAAAAGTTGTCAACTTGTCAGAAAGCCACAAAACTCCAACTCAATTTTGATAGGATGTTTAAGTAGATCAGGACTGGGCAACTCTGGCCATTATCGTTCATTTTTATGCAGTGTTTAGTTTCAAACCCACCTAAAGACCACTAAAAAGCCCTTACACATATTAAAAAATAAAAATGAAGTCACTCTGAAGGACAGTGGACCTTGAGGGCCAGAGTTGCTCACCCCTGTATGGACAATGCATGAGTAGGAATAAATACTTGTGGCTGACTGAGTAATTTTAAAGCTTTTACATGTGTAGTATATGTGCATATCAGATTACCATATTGGCTTTTACAG
Seq C2 exon
AGTTGTAGATGGAATTGAAGACAATGGGCACGTATTTCAATTCAATGTTGAAGACACCTCTACCAAAGGTACTACAGAGACATCACAGAGTAGTAAGACACTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061990:ENSDART00000089042:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.838
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF153971=DUF4618=PU(27.3=56.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]