GgaINT0142790 @ galGal4
Intron Retention
Gene
ENSGALG00000003354 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr27:4849006-4849481:-
Coord C1 exon
chr27:4849198-4849481
Coord A exon
chr27:4849113-4849197
Coord C2 exon
chr27:4849006-4849112
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCTCACTGCCCCCCCGCAGAGC
3' ss Score
10.33
Exon sequences
Seq C1 exon
TCGGACAGCGGCCCCGGCCCGGAGCAGTCCCTCCCCTGCATCGCGGAGGACGAGGAAGAGGCGGATGAGGTCTTCCAGCGATCGCCCCCCGCCGTCGCCCCCCGCGAACCGCTGCTGCCTCCACGTAGCAGCCCCGCGCGGCTCCCCGGCGCTCCTCGCGGAGACGAGCGCGGCATCCCCACGGCGCGGCCCCGGGGGGAGGCGGGGGGCGGCGGGGGACGGAGGGCGGCTCGGCTCCTCGGCCCCTCCCTGCACGCCCCTGGGCCCCCCGAACTCAGCCCCAG
Seq A exon
GTAAGACCGAAGGCTTCACATGTCCGGGAGGGGGCGGGGGTGGACACGGTGAGGACGAGGTTGGGTCCTCACTGCCCCCCCGCAG
Seq C2 exon
AGCGGTGGACGGGATCGAAGACGACGGGGGGATCCGGGAGGTGCGAACCTTCTGCTTCGGCGCGGCCCCTCGGCTGCAGGGAGCGCCCAGGGGCTCCCCGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354:ENSGALT00000005306:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACGTAGCAGCCCC
R:
TCGTCTTCGATCCCGTCCAC
Band lengths:
191-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]