DreINT0084808 @ danRer10
Intron Retention
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17443453-17447370:+
Coord C1 exon
chr3:17443453-17443799
Coord A exon
chr3:17443800-17447287
Coord C2 exon
chr3:17447288-17447370
Length
3488 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TCCTTGTGTCTGTCCTGTAGGGT
3' ss Score
11.06
Exon sequences
Seq C1 exon
GAAAAATTTGACGAGTGCAAGCTGCCATTTATCGTGGAGACCGAACAAGAGGACGACACTGGGCAGGATTTAGGCAGGAGACCCCTGCTCTCTGGCTTCAGCTGCCCTTCATCTCAGTCCAATCTGAGTGCCATGCTAGGGGAGGAGTTTCGGCACCACAACATGCTCCGTTTCTGCAGATCGCCCGTCCAGAGCTCTCGCATACAGAGTCCTCAAATACCACTCCACGAGGAGCAGACGACGGCTTCAGCTCCTGTCCCAAAAACAGACAAGATCTCCTGCAACAGACCAGCCAAACTGCTTATTCCCACTCTCAACTGCGTCAGCCCGCTGGACCTGAGCCCTCG
Seq A exon
GTGAGCAATGCTGGAATACGTTATAATGATAGCTTTGCTTTAAAGTTAGTTAGTTAGTTAGTTTATTTATATAGCACATTTTTTACAACACAATGTTGCCCAAAGTGCTGAACACAATCAATGCTAAATTAAAAGAAAACCTACATCATATACATAACAATTAAAACGTAAGGCAAACCCCTCAACATTAAAATGCTAAAGAACAAAGATGGAGTTTCAGAAGCTTTTTAAAAACAGATAGAGTTGGAGCGTGTCTGATGTGGGCTGGAAGCCCGTTCCAGAGTTTTGGGGCGACAACAGCAAAAGCCCGATCCCCACTTTGCTTACACCGGGACCTTGGTACAGAAAGAATAAACTGATCAGAGGACCCTAGTGACCTACCAGGATTATACACATGTAGGAGGTCTGATAAGAAAGGTGGTGCCAGATCATTTAAGTATTTAAAAACAAAAATGTATAGTTTAAAATCAATTCGTGATCTAACAGGCAGCCAGCCTAGAGAGGAAAGAACTGCGGGTATGTGCTCATACTTGCGAGTGCCTGTCAGAAGTCTTGCAGCTGCATTTTGTACTAATTGCAATCTATTCAGGGCAGTTTGACTAATACCCACATATAGATAATTGCAATAGTCAAGTCTTCCCAAAATAAAAGCAAGGATCACCTTCTCAAGGTCATTAAAAGAAAGAAATGACTTCACTTTTGCCACAAGTCGTAGATGGTAAAAACTGGATTGAACAACTGAATTTACTTGTTTGTTAAATTTCAGATCACTATCAAAATGAAACCCAAGGTTTCTAACAACAGTTTTTTGATAGGTTGATAGCTTATCAAAACCTATTAAATGCAGAGGGTTAGAATCGTCAAACCAGACCAGCTCAGTTTTTTTCTTTATTGAAAAAGGGATAGTTAAAGGGGATAGTTCACCCAAAAATTAACATTTTCTCATCATTTGTTTACAATCAAGTGGTTCTAAATGTTAATGAATTTCTTTCTTTTGTTGAACACAAAACAACAACAGGCTTTTTCTTAAAATGTAGCCCTATCTACATTTCTGGAGCATGAAAATTATGTAGCCAGAGGTACATTTCATCTTTTAAACGAACCCTACGAGGAGGTGTGACGCTGTTCCTTTTCGTGCTTACCAGCTGACCGATTACCTTCGCATAAACGGTTTATCTGTTGTTACCAGTTTGTTTAGTGACTTAGCACGTACTTCGACAGACTTGTGATGCCGAGCGTAGTTGACTGCGATGACAGGGTTCGATTCTGGCATAAAACAGTTCCAGAAAGCATGTAAGACAAAAACAAAAGCCAAAAAATTAAATAAATAAGTAAATAACAGGTAAAATCTGAAAACACTGTAAAAATCAGGCTGCCGTGAGAGCTTTTCTTTTTCTGGCTTGCTTTTGATAACACTGTTGGTTGGGTTTAGGGAAGAAGGAGGGTGGGTAAGTCGATCGGACAGTCAGTCAGTCGACACCGGCTTCTGGTGAATTTACACGAGATCAGCAGGCGCGAATGTCACTCGTGAAAGAAATTTGAGATCTGAAAAAGCGTACACAGCGGCCTCTAGTGGATTCGCCAAAACAAAAACTGCAAAAAAAGAAGAAAAAAAAACACACCTCCTGGGATGTATTTGGTGCCCTCCAGAAATGTATAAAGGGGTACGTTCTTGCAGCAAGAAAACAATACAGAAGAAATACAAGAGGTTCCATTCTGGTTGCTCGAAGGGCAGTTTTTGTACAAACAGATGATGAAGCATTGTCTTTAATCATTGGTATCTGTCTGGTAGAAACCTATTAATCATAATCATATGCTTAACTCTCAACATTCAATATTGGCACATTTCAACAACTCAATTGATTGAAAACTACAGATGAGCATGTGATTTATATCAAAAAGCACTAACATTTATAACATTAACTTTGAGTTCCTTTAAAAGCATAAAAGGAATATAAATAGAATATATGGAAAGAATTTACCTAAAAGGTCATATTTGAGATGTTGACAGTCATATATGTGTTCCACACTGCTATAAACACTATTAGGACACTATTAGGATAATTCACAAAAAAAGTAACTTCAATGTTTCTGCGTTATTTTGAGCAAATTTGTTCTTCCGGTTTAAAAGAAATTTTAAAGCTACGTCACACCATGAGATCCTTGTGTGAATTCCAGCGTGTAGACTGGATGTCTGTACCAGTGGGTACTACATGACGTCTTTCCAGGTCGCCAATCAGCGCACTCTATTGTGAGTGAGGTGCAACTTCATTATTATGCATGATAGCTTCGAAGTTACAGTGTTCAGAGAGACGCCACGTTGTATTGACAACTGTATTTAAAACAAGTGGAAGAAGAATTGTTCGGAGACATCGGTCATCAGTGTTGCGGTTATCTGCCGTACGAAAGTTTTGTTTCCATTTTCCCACAATGACAGCACCGATGTACTGTATGTGGACATGTGTGGATTACAGTGGTCTGCTAACATGCGACAAAAATATGTTAGTAAGGAATTTTTTTTTTATTGAAACTCCCCTTTTCATGGAAACCTTCCCTCTTTCGCCACTCGACACTCCCACCTAAACAGAGCTGGACCCACTTTCCTGACTTTTTTCAAACAGAGGTGTGAAAACACCCTGCTGAGACAGGGGGGGTTTCATGGCCCTTTAATTTATCTAACATGTGCAAAACTGGAATATCGCATATAAGGTTTATGAATAAAGTACCGTTTTCATCCAATAAGTTGAAGAGAACACAATTGTCACAAATAGGTGGCAAATATTAATAAAAAATAAAAAGGGAATTGGCTCTGGAAGGAGAAGCTACTGTGAACCCTCTTTTTGTGGTAAATTACTAGCGCCTCAGAACCGCTTTGATGACAGACTTTGGCTTAGGGATATTAAAATGAGCAAAACAACATTCAGATGTTTTACAATGTTGTCAGACCAATGGTAATTAGGCAAGTTTGTTCTGTAGACAATCGAAAAAATATTGCTTAAGGAGGCTAATCATACCGGTCTTAAAATATATTAAATCAATTAAAAACTGCTTTTAATCTAACCGAAATAAAACAAAAAAAACTTTCTCAAGAAGAAAAAATATTATAGGAAATAATAAAGATTTTTTGCTCTGTTTAACATCATTTGGGAAATATCTGATGATATAAAATATATATAATAATTAAATATGTATAATAATATATTATATTTAAAAATATATAAAGAAATAATAATTTTGACTTCAGCTGTATGAAATTTATGGCAGGAAAAAAATGTAATGTGATTGAAATTTACAAACACCAATGCAACAATAGCAACACTTACAAGTGTATTTTGGATGTTTTCTTTACTGAAGAGACACACCAAAAGGCCGTATTTGCAATGAAACGACCTCTAGTAAGAGGAAACCATCTTATAAAAGTATTGTTGAAACTGAGAGCTGATTATGTTGTTTACTGACGCTCTAATGTCCTTGTGTCTGTCCTGTAG
Seq C2 exon
GGTCGTCGATGGCATTGAGGATAATGAACATGCCTTTCACTTTAATGTTGAGCACAGTGAATCTCCTAACACGGAGGTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565:ENSDART00000153763:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]