HsaALTD1007027-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr10:25934228-25935830:+
Coord C1 exon
chr10:25934228-25934328
Coord A exon
chr10:25934329-25934526
Coord C2 exon
chr10:25935744-25935830
Length
198 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
CTTTTTGTTTTGGGTTACAGGCC
3' ss Score
8.9
Exon sequences
Seq C1 exon
CAGTTCTTCCCCTGCTCGGCTGCCCCTGCCCGCCCCTCGAGGGAGCGCCCGTAGCCAGCGCCCCCGTAAAGAAATAAGGAGGCGCCCGGCTTCCCGCCCAG
Seq A exon
GTACGTGTCGGGACAGCGCAGGGGACTGGCTTGGGGCGGCGGTGGGTAGCGGCGCCCGCGCGGCGCTGGAAACGGCCCCGCTTCCTTGGACCCCGGGGCTTGCAGGGCGGGCCCGGGGCTCTCTGAGCGCGAGGCTGCCGCGACCGCCCGCCCGCCCAGGTCAGATCCGGAGGACCTGTGTGTTTGTCGGGGCCTGGG
Seq C2 exon
GCCCAGGGCCCCAGTGCAGCCTGGACACAGTATTCAAAGTTTTGGCGTCTGAGCATTGTTATGCGTTATTTTCAAGCTTTGCTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCTTCCCCTGCTCGG
R:
CGTTAGCAAAGCTTGAAAATAACGC
Band lengths:
188-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains