HsaEX6087893 @ hg38
Exon Skipping
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr10:25934267-25952278:+
Coord C1 exon
chr10:25934267-25934328
Coord A exon
chr10:25935744-25935830
Coord C2 exon
chr10:25952094-25952278
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTTTTGTTTTGGGTTACAGGCC
3' ss Score
8.9
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
AGGGAGCGCCCGTAGCCAGCGCCCCCGTAAAGAAATAAGGAGGCGCCCGGCTTCCCGCCCAG
Seq A exon
GCCCAGGGCCCCAGTGCAGCCTGGACACAGTATTCAAAGTTTTGGCGTCTGAGCATTGTTATGCGTTATTTTCAAGCTTTGCTAACG
Seq C2 exon
GTTTTTAAACCTTTGAGATGTTTCCATTAATTGGAAAAACAATCATCTTTGATAACTTTCCTGATCCTTCTGATACATGGGAAATCACTGAGACAATTGGCAAAGGAACTTATGGGAAAGTTTTTAAAGTATTGAATAAGAAAAATGGCCAAAAAGCAGCAGTCAAAATTCTTGATCCAATTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(13.1=62.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCCCCCGTAAAGAAATA
R:
ACTTTCCCATAAGTTCCTTTGCCA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains