HsaALTD1008986-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000103023 | PRSS54
Description
protease, serine 54 [Source:HGNC Symbol;Acc:HGNC:26336]
Coordinates
chr16:58284590-58286195:-
Coord C1 exon
chr16:58285937-58286195
Coord A exon
NA
Coord C2 exon
chr16:58284590-58284721
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTTAAG
5' ss Score
-14.95
3' ss Seq
CTCTCTGTTGCATGGTCCAGACA
3' ss Score
4.93
Exon sequences
Seq C1 exon
GAAGGACATTGTCGTTATAGTGGGTATAAGTAACATGGATCCTAGCAAGATTGCTCACACAGAGTATCCAGTCAATACCATCATCATCCATGAGGACTTTGATAACAACTCCATGAGCAACAACATAGCCCTCCTGAAGACAGACACAGCGATGCATTTTGGCAACCTGGTCCAGTCCATCTGCTTCCTCGGCAGAATGCTGCATACACCACCAGTCTTGCAGAACTGCTGGGTGTCAGGATGGAATCCCACATCTGCA
Seq A exon
NA
Seq C2 exon
ACAGGAAATCACATGACGATGAGTGTCCTGAGGAAAATCTTCGTGAAAGATCTTGACATGTGTCCCCTATACAAACTCCAGAAGACAGAATGCGGCAGCCACACGAAAGAGGAAACCAAGACTGCCTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103023-5-8,6-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(44.2=96.0)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACACCACCAGTCTTGCA
R:
TCCTCAGGACACTCATCGTCA
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains