MmuALTD1029544-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000048400 | Prss54
Description
protease, serine 54 [Source:MGI Symbol;Acc:MGI:1918243]
Coordinates
chr8:95564350-95565709:-
Coord C1 exon
chr8:95565458-95565709
Coord A exon
NA
Coord C2 exon
chr8:95564350-95564478
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTTAAT
5' ss Score
-9.25
3' ss Seq
CTCTCTGTTGCATGGTCCAGACA
3' ss Score
4.93
Exon sequences
Seq C1 exon
GTTATTGCTGTTGTTGGTATATCTAACATGGATCCCCGAAAGACTGACCACAGAGAGTATTCAGTCAATACCATCATCCCCCATGAGAACTTTGACAACGTCTCAATGGGCAATAACATAGCCCTCCTGAAGACAGAATCCGCCATGCATTTCAACGACCTGGTCCAGGCCATCTGCTTCCTGGGCAAAAAGCTACATAAGCCACCAGCCTTGAAGAACTGCTGGGTAGCAGGATGGAATCCCACGTCTGCA
Seq A exon
NA
Seq C2 exon
ACAGGAAATCACATGACAATGAGTATCCTGAGGAGAATCTCCGTGAAGGACATTGAAGTGTGTCCCTTACGTAGACACCAGAAAACAGAATGTGCCAGTCACACAAAGGAACCCAACAATGTTTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048400-8-10,9-10,10-10-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCACCAGCCTTGAAGAAC
R:
TGTCCTTCACGGAGATTCTCC
Band lengths:
106-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types