HsaALTD1010096-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000105497 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr19:51581391-51581882:+
Coord C1 exon
chr19:51581391-51581517
Coord A exon
chr19:51581518-51581604
Coord C2 exon
chr19:51581787-51581882
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
GTATCCTTTCTAATTAACAGGGT
3' ss Score
7.38
Exon sequences
Seq C1 exon
GCATCAGTGTCATTTGAGGACGTGACCGTGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTCTATAGCCATCTCTTCGCAGTGG
Seq A exon
GTGAGCACAACTGACCTGGGAATCTTGGCTGGATCCTGTTGAGGAGATTTCCTTCCTCCTCATTGCAGAACGCAGTGGGATATCAAA
Seq C2 exon
GGTATCACATTCCCAACCCAGAGGTCATCTTCAGAATGCTAAAAGAAAAGGAGCCGCGTGTGGAGGAGGCTGAAGTCTCACATCAGAGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105497-5-8,7-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.206
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATTTGAGGACGTGACCG
R:
ACACGCGGCTCCTTTTCTTTT
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains