HsaINT0186304 @ hg38
Intron Retention
Gene
ENSG00000105497 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr19:51581391-51581882:+
Coord C1 exon
chr19:51581391-51581517
Coord A exon
chr19:51581518-51581786
Coord C2 exon
chr19:51581787-51581882
Length
269 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
GTATCCTTTCTAATTAACAGGGT
3' ss Score
7.38
Exon sequences
Seq C1 exon
GCATCAGTGTCATTTGAGGACGTGACCGTGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTCTATAGCCATCTCTTCGCAGTGG
Seq A exon
GTGAGCACAACTGACCTGGGAATCTTGGCTGGATCCTGTTGAGGAGATTTCCTTCCTCCTCATTGCAGAACGCAGTGGGATATCAAAGTATGTCATGACTCTTTTATCGGTTTGTCCTGGATTGTTTGTTTCTTTTGGGCACCTTCTAGTATTATTTTGTGCCCAGTGGAAAATGTTGACTTTTCTAATGAGCCAGTGTAAAGCTTCATTGAATGGCCTCTAAAACTGAAGAAGCTACACCCAAATCCAGTATCCTTTCTAATTAACAG
Seq C2 exon
GGTATCACATTCCCAACCCAGAGGTCATCTTCAGAATGCTAAAAGAAAAGGAGCCGCGTGTGGAGGAGGCTGAAGTCTCACATCAGAGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105497:ENST00000262259:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.206
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAGTGTCATTTGAGGACG
R:
TGACACCTCTGATGTGAGACT
Band lengths:
221-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains